PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g56970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 177aa    MW: 20166.3 Da    PI: 9.4335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g56970genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000674870123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+k+F++   L  H  +H
  CA00g56970 48 FECKTCNKRFPSFQALGGHRTSH 70
                89**********99998888777 PP

2zf-C2H2157e-0590112123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++Cg+ Fs    L  H+r+H
  CA00g56970  90 HKCSICGMEFSLGQALGGHMRRH 112
                 79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4944875IPR007087Zinc finger, C2H2
SuperFamilySSF576674.4E-948112No hitNo description
SMARTSM003550.0874870IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-124872IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-488115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.13890117IPR007087Zinc finger, C2H2
SMARTSM003550.03490112IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-990115IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTTMKRSRED DMHIETEAMA NCALMLLSHF NNNKNDNNTS SSNYHNDFEC KTCNKRFPSF  60
QALGGHRTSH NKRIRLLGEF LVQTKKNKMH KCSICGMEFS LGQALGGHMR RHRDEINKMS  120
TMAIEKTMIP VLKKSNSSKR ICGLDLNLTP RDDHVDDDLM LWPTAPIASP VLRIFI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546676.11e-130PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-35ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9D52e-92M1B9D5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401417e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-35C2H2 family protein